Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMW99676.1 | AMX01077.1 | ATY39_09510 | ATY39_10705 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.406 |
AMW99870.1 | AMX01077.1 | ATY39_10710 | ATY39_10705 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.636 |
AMX00331.1 | AMX01077.1 | ATY39_13480 | ATY39_10705 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.444 |
AMX01077.1 | AMW99676.1 | ATY39_10705 | ATY39_09510 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.406 |
AMX01077.1 | AMW99870.1 | ATY39_10705 | ATY39_10710 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. | 0.636 |
AMX01077.1 | AMX00331.1 | ATY39_10705 | ATY39_13480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.444 |
AMX01077.1 | guaA | ATY39_10705 | ATY39_12100 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Catalyzes the synthesis of GMP from XMP. | 0.520 |
AMX01077.1 | ybeY | ATY39_10705 | ATY39_04305 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.432 |
guaA | AMX01077.1 | ATY39_12100 | ATY39_10705 | Hypothetical protein; Catalyzes the synthesis of GMP from XMP. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.520 |
ybeY | AMX01077.1 | ATY39_04305 | ATY39_10705 | rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.432 |