STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TXNL4AThioredoxin like 4A. (142 aa)    
Predicted Functional Partners:
PRPF6
pre-mRNA processing factor 6.
    
 0.999
PRPF8
pre-mRNA processing factor 8.
    
 0.999
DDX23
DEAD-box helicase 23.
    
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 0.999
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
 0.999
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.995
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
  0.994
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.994
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1.
   
 0.994
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.994
Your Current Organism:
Amazona collaria
NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.