STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS7Pseudouridine synthase 7. (650 aa)    
Predicted Functional Partners:
DKC1
Dyskerin pseudouridine synthase 1.
   
 
 0.976
NHP2
NHP2 ribonucleoprotein.
  
 0.973
NOP58
NOP58 ribonucleoprotein.
   
 
 0.970
SNU13
Small nuclear ribonucleoprotein 13.
  
 0.949
GAR1
GAR1 ribonucleoprotein.
   
 0.942
RRP9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 
  0.940
MPHOSPH10
M-phase phosphoprotein 10.
   
 
  0.936
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
  0.933
POP4
POP4 homolog, ribonuclease P/MRP subunit.
   
 
 0.933
POP1
POP1 homolog, ribonuclease P/MRP subunit.
   
 
  0.932
Your Current Organism:
Amazona collaria
NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.