ENSACOP00000006354 protein (Amazona collaria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACOP00000006354

annotation not available (54 aa)

Predicted Functional Partners:

ENSACOP00000009856

0.967

ARID4A

0.904

ARID4B

0.904

LEO1

0.870

ENSACOP00000005927

0.851

H2AZ2

0.841

ENSACOP00000000757

0.823

ENSACOP00000013004

0.823

ENSACOP00000023009

0.823

HAT1

0.817

Your Current Organism:

Amazona collaria

NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSACOP00000011249	ENSACOP00000022281	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.755
ARID4A	ENSACOP00000005927	ENSACOP00000011249	ENSACOP00000005927	AT-rich interaction domain 4A.	annotation not available	0.910
ARID4A	ENSACOP00000006354	ENSACOP00000011249	ENSACOP00000006354	AT-rich interaction domain 4A.	annotation not available	0.904
ARID4A	ENSACOP00000009856	ENSACOP00000011249	ENSACOP00000009856	AT-rich interaction domain 4A.	annotation not available	0.916
ARID4A	H2AZ2	ENSACOP00000011249	ENSACOP00000005134	AT-rich interaction domain 4A.	H2A.Z variant histone 2.	0.982
ARID4B	ARID4A	ENSACOP00000022281	ENSACOP00000011249	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.755
ARID4B	ENSACOP00000005927	ENSACOP00000022281	ENSACOP00000005927	AT-rich interaction domain 4B.	annotation not available	0.910
ARID4B	ENSACOP00000006354	ENSACOP00000022281	ENSACOP00000006354	AT-rich interaction domain 4B.	annotation not available	0.904
ARID4B	ENSACOP00000009856	ENSACOP00000022281	ENSACOP00000009856	AT-rich interaction domain 4B.	annotation not available	0.927
ARID4B	H2AZ2	ENSACOP00000022281	ENSACOP00000005134	AT-rich interaction domain 4B.	H2A.Z variant histone 2.	0.982
ENSACOP00000000757	ENSACOP00000005927	ENSACOP00000000757	ENSACOP00000005927	annotation not available	annotation not available	0.645
ENSACOP00000000757	ENSACOP00000006354	ENSACOP00000000757	ENSACOP00000006354	annotation not available	annotation not available	0.823
ENSACOP00000000757	ENSACOP00000009856	ENSACOP00000000757	ENSACOP00000009856	annotation not available	annotation not available	0.475
ENSACOP00000000757	ENSACOP00000013004	ENSACOP00000000757	ENSACOP00000013004	annotation not available	annotation not available	0.680
ENSACOP00000000757	ENSACOP00000023009	ENSACOP00000000757	ENSACOP00000023009	annotation not available	annotation not available	0.681
ENSACOP00000000757	H2AZ2	ENSACOP00000000757	ENSACOP00000005134	annotation not available	H2A.Z variant histone 2.	0.709
ENSACOP00000000757	LEO1	ENSACOP00000000757	ENSACOP00000024530	annotation not available	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.686
ENSACOP00000005927	ARID4A	ENSACOP00000005927	ENSACOP00000011249	annotation not available	AT-rich interaction domain 4A.	0.910
ENSACOP00000005927	ARID4B	ENSACOP00000005927	ENSACOP00000022281	annotation not available	AT-rich interaction domain 4B.	0.910
ENSACOP00000005927	ENSACOP00000000757	ENSACOP00000005927	ENSACOP00000000757	annotation not available	annotation not available	0.645