STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKNOX1PBX/knotted 1 homeobox 1. (431 aa)    
Predicted Functional Partners:
PBX3
PBX homeobox 3.
    
0.850
PBX4
PBX homeobox 4.
    
0.850
PBX1
PBX homeobox 1.
    
0.850
ENSACOP00000018626
annotation not available
    
 0.850
HOXB1
Homeobox B1.
    
 0.810
ENSACOP00000016324
annotation not available
    
 
 0.628
ENSACOP00000004804
annotation not available
    
 0.562
SMAD5
SMAD family member 5.
    
 0.562
ENSACOP00000022989
annotation not available
    
 0.562
HDAC1
Histone deacetylase 1.
    
 0.560
Your Current Organism:
Amazona collaria
NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.