STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXD13Homeobox D13. (300 aa)    
Predicted Functional Partners:
EMX2
Empty spiracles homeobox 2.
    
 
 0.584
PBX3
PBX homeobox 3.
    
 
 0.567
PBX4
PBX homeobox 4.
    
 
 0.567
PBX1
PBX homeobox 1.
    
 
 0.567
ENSACOP00000018626
annotation not available
    
 
 0.567
IRX4
Iroquois homeobox 4.
  
 
 
 0.549
HAND2
Heart and neural crest derivatives expressed 2.
    
 
 0.545
HTT
Huntingtin.
      
 0.526
MCPH1
Microcephalin 1.
      
 0.525
NUP98
Nucleoporin 98.
      
 0.497
Your Current Organism:
Amazona collaria
NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.