STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RXRARetinoid X receptor alpha. (523 aa)    
Predicted Functional Partners:
NR1H3
Nuclear receptor subfamily 1 group H member 3.
   
0.998
PPARG
Peroxisome proliferator activated receptor gamma.
    
0.987
MED1
Mediator complex subunit 1.
    
 0.973
NCOA1
Nuclear receptor coactivator 1.
   
 0.969
NCOA2
Nuclear receptor coactivator 2.
   
 0.969
NCOA3
Nuclear receptor coactivator 3.
   
 0.969
NR1H4
Nuclear receptor subfamily 1 group H member 4.
   
0.964
PPARA
Peroxisome proliferator activated receptor alpha.
   
0.961
ENSACOP00000003411
annotation not available
    
0.958
THRB
Thyroid hormone receptor beta.
    
0.958
Your Current Organism:
Amazona collaria
NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.