STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PM20D2Peptidase M20 domain containing 2. (458 aa)    
Predicted Functional Partners:
CYB5R4
Cytochrome b5 reductase 4.
    
  0.820
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.795
EPHX2
Epoxide hydrolase 2.
    
 0.737
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 
 0.645
TK1
Thymidine kinase 1.
    
 0.610
TYMS
Thymidylate synthetase.
    
  0.556
MDN1
Midasin AAA ATPase 1.
    
 0.548
PGRMC2
Progesterone receptor membrane component 2.
     
 0.540
ACADM
acyl-CoA dehydrogenase medium chain.
    
 0.532
ACAD8
acyl-CoA dehydrogenase family member 8.
    
 0.532
Your Current Organism:
Amazona collaria
NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.