STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRBD1S1 RNA binding domain 1. (993 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.996
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.974
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.968
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.937
ENSACOP00000021961
annotation not available
   
 0.937
SSRP1
Structure specific recognition protein 1.
   
 0.909
ENSACOP00000017143
annotation not available
   
 0.909
POLR2E
RNA polymerase II subunit E.
    
 0.896
POLR2F
RNA polymerase II subunit F.
   
 0.866
ENSACOP00000006505
annotation not available
   
 0.859
Your Current Organism:
Amazona collaria
NCBI taxonomy Id: 241587
Other names: A. collaria, yellow-billed parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.