Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NGO_0948 | NGO_1548 | NGO_0948 | NGO_1548 | Hypothetical protein. | DSBA oxidoreductase. | 0.603 |
NGO_0948 | NGO_1717 | NGO_0948 | NGO_1717 | Hypothetical protein. | DSBA oxidoreductase. | 0.582 |
NGO_1548 | NGO_0948 | NGO_1548 | NGO_0948 | DSBA oxidoreductase. | Hypothetical protein. | 0.603 |
NGO_1548 | NGO_1717 | NGO_1548 | NGO_1717 | DSBA oxidoreductase. | DSBA oxidoreductase. | 0.905 |
NGO_1548 | NGO_2131 | NGO_1548 | NGO_2131 | DSBA oxidoreductase. | Peptidase. | 0.580 |
NGO_1548 | dsbB | NGO_1548 | NGO_1292 | DSBA oxidoreductase. | Dihydrolipoamide acyltransferase; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.760 |
NGO_1548 | dsbD | NGO_1548 | NGO_0978 | DSBA oxidoreductase. | Thiol:disulfide interchange protein; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.555 |
NGO_1548 | lptA | NGO_1548 | NGO_1606 | DSBA oxidoreductase. | Sugar ABC transporter substrate-binding protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. | 0.693 |
NGO_1548 | lptD | NGO_1548 | NGO_1715 | DSBA oxidoreductase. | LPS biosynthesis protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.517 |
NGO_1548 | msrB | NGO_1548 | NGO_2059 | DSBA oxidoreductase. | Trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.526 |
NGO_1548 | polA | NGO_1548 | NGO_2103 | DSBA oxidoreductase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.496 |
NGO_1655 | NGO_1717 | NGO_1655 | NGO_1717 | Peptidylprolyl isomerase. | DSBA oxidoreductase. | 0.421 |
NGO_1655 | msrB | NGO_1655 | NGO_2059 | Peptidylprolyl isomerase. | Trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.571 |
NGO_1717 | NGO_0948 | NGO_1717 | NGO_0948 | DSBA oxidoreductase. | Hypothetical protein. | 0.582 |
NGO_1717 | NGO_1548 | NGO_1717 | NGO_1548 | DSBA oxidoreductase. | DSBA oxidoreductase. | 0.905 |
NGO_1717 | NGO_1655 | NGO_1717 | NGO_1655 | DSBA oxidoreductase. | Peptidylprolyl isomerase. | 0.421 |
NGO_1717 | NGO_2131 | NGO_1717 | NGO_2131 | DSBA oxidoreductase. | Peptidase. | 0.404 |
NGO_1717 | dsbB | NGO_1717 | NGO_1292 | DSBA oxidoreductase. | Dihydrolipoamide acyltransferase; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.713 |
NGO_1717 | dsbD | NGO_1717 | NGO_0978 | DSBA oxidoreductase. | Thiol:disulfide interchange protein; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily. | 0.530 |
NGO_1717 | lptA | NGO_1717 | NGO_1606 | DSBA oxidoreductase. | Sugar ABC transporter substrate-binding protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. | 0.592 |
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