STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMW32602.1FMN-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)    
Predicted Functional Partners:
AMW32603.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NqrDE/RnfAE family.
 
 0.997
rnfA-2
NADH:ubiquinone reductase (Na(+)-transporting) subunit E; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
 0.997
AMW32604.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
AMW32601.1
NADH:ubiquinone oxidoreductase, Na translocating, B subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
AMW32605.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.708
rnfD
Electron transporter RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
    
 0.628
AMW32606.1
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0173 family.
       0.555
AMW32600.1
Cytochrome B5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.488
Your Current Organism:
Fervidobacterium islandicum
NCBI taxonomy Id: 2423
Other names: ATCC 49647, DSM 5733, F. islandicum, Fervidibacterium islandicum, strain H-21, strain H21
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