STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMW33794.1Spore coat protein CotH; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)    
Predicted Functional Partners:
AMW32113.1
Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.872
AMW33370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.574
AMW32284.1
Carbohydrate-binding protein CenC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
AMW33371.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
AMW32231.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.497
AMW32082.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.478
AMW32259.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.478
AMW32573.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.478
AMW32615.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.478
AMW32823.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.478
Your Current Organism:
Fervidobacterium islandicum
NCBI taxonomy Id: 2423
Other names: ATCC 49647, DSM 5733, F. islandicum, Fervidibacterium islandicum, strain H-21, strain H21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.