STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MGG_08169U4/U6.U5 tri-snRNP-associated protein 2. (563 aa)    
Predicted Functional Partners:
MGG_13500
U5 small nuclear ribonucleoprotein component.
   
 0.955
MGG_01095
Uncharacterized protein.
    
 0.949
MGG_17702
SNRNP27 domain-containing protein.
   
 0.940
MGG_05244
Pre-mRNA-processing-splicing factor 8.
   
 0.904
MGG_07031
Proteasome subunit beta.
 
    
 0.893
PRP28
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity).
 
 
 0.886
MGG_04693
WD repeat-containing protein 57.
   
 0.882
MGG_13154
Pre-mRNA-processing factor 31.
    
 0.875
MGG_01157
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.859
MGG_07213
Pre-mRNA-splicing factor prp1.
    
 0.823
Your Current Organism:
Pyricularia oryzae
NCBI taxonomy Id: 242507
Other names: Magnaporthe grisea 70-15, P. oryzae 70-15, Pyricularia oryzae 70-15
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