STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYF1Pre-mRNA-splicing factor SYF1; Involved in pre-mRNA splicing and cell cycle progression. (832 aa)    
Predicted Functional Partners:
MGG_07472
Pre-mRNA-processing protein 45.
   
 0.999
MGG_03116
Spliceosome component.
   
 0.999
MGG_06395
Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.
   
 0.999
MGG_06309
Cell cycle control protein cwf14.
    
 0.999
MGG_01109
Nuclear cap-binding protein.
   
 0.999
ISY1
Pre-mRNA-splicing factor ISY1; Involved in pre-mRNA splicing.
    
 0.999
SYF2
Pre-mRNA-splicing factor SYF2; Involved in pre-mRNA splicing.
    
 0.999
CLF1
Pre-mRNA-splicing factor CLF1; Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity).
   
0.999
MGG_13500
U5 small nuclear ribonucleoprotein component.
   
 
 0.996
MGG_03182
Splicing factor 3B subunit 2.
   
 
 0.996
Your Current Organism:
Pyricularia oryzae
NCBI taxonomy Id: 242507
Other names: Magnaporthe grisea 70-15, P. oryzae 70-15, Pyricularia oryzae 70-15
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