Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PG_0232 | PG_0410 | PG_0232 | PG_0410 | Zinc carboxypeptidase, putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.700 |
| PG_0232 | PG_1424 | PG_0232 | PG_1424 | Zinc carboxypeptidase, putative. | Peptidylarginine deiminase; Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth. | 0.557 |
| PG_0232 | hagE | PG_0232 | PG_2024 | Zinc carboxypeptidase, putative. | Hemagglutinin protein HagE; Cleaves human complement component C3. May enable P.gingivalis to evade complement-mediated killing during the immune response. Plays an important role in soft tissue infections and is a virulence factor; Belongs to the peptidase C25 family. | 0.734 |
| PG_0232 | prtRII | PG_0232 | PG_0506 | Zinc carboxypeptidase, putative. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.759 |
| PG_0410 | PG_0232 | PG_0410 | PG_0232 | Hypothetical protein; Identified by Glimmer2; putative. | Zinc carboxypeptidase, putative. | 0.700 |
| PG_0410 | PG_1424 | PG_0410 | PG_1424 | Hypothetical protein; Identified by Glimmer2; putative. | Peptidylarginine deiminase; Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth. | 0.766 |
| PG_0410 | prtRII | PG_0410 | PG_0506 | Hypothetical protein; Identified by Glimmer2; putative. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.776 |
| PG_0505 | prtRII | PG_0505 | PG_0506 | Hypothetical protein; Identified by Glimmer2; putative. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.723 |
| PG_1424 | PG_0232 | PG_1424 | PG_0232 | Peptidylarginine deiminase; Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth. | Zinc carboxypeptidase, putative. | 0.557 |
| PG_1424 | PG_0410 | PG_1424 | PG_0410 | Peptidylarginine deiminase; Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth. | Hypothetical protein; Identified by Glimmer2; putative. | 0.766 |
| PG_1424 | hagE | PG_1424 | PG_2024 | Peptidylarginine deiminase; Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth. | Hemagglutinin protein HagE; Cleaves human complement component C3. May enable P.gingivalis to evade complement-mediated killing during the immune response. Plays an important role in soft tissue infections and is a virulence factor; Belongs to the peptidase C25 family. | 0.703 |
| PG_1424 | prtRII | PG_1424 | PG_0506 | Peptidylarginine deiminase; Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.888 |
| fimA | prtC | PG_2132 | PG_1542 | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | Collagenase; Expresses collagenase activity. Hydrolyzes type I collagen. May play a role in virulence (By similarity). | 0.549 |
| fimA | prtRII | PG_2132 | PG_0506 | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.560 |
| hagE | PG_0232 | PG_2024 | PG_0232 | Hemagglutinin protein HagE; Cleaves human complement component C3. May enable P.gingivalis to evade complement-mediated killing during the immune response. Plays an important role in soft tissue infections and is a virulence factor; Belongs to the peptidase C25 family. | Zinc carboxypeptidase, putative. | 0.734 |
| hagE | PG_1424 | PG_2024 | PG_1424 | Hemagglutinin protein HagE; Cleaves human complement component C3. May enable P.gingivalis to evade complement-mediated killing during the immune response. Plays an important role in soft tissue infections and is a virulence factor; Belongs to the peptidase C25 family. | Peptidylarginine deiminase; Deiminates the guanidino group of C-terminal arginine residues on a variety of peptides, including the vasoregulatory peptide-hormone bradykinin, to yield ammonia and a citrulline residue. May promote the growth of the pathogen in the periodontal pocket by producing ammonia, ammonia having a protective effect during acidic cleaning cycles in the mouth. | 0.703 |
| hagE | prtRII | PG_2024 | PG_0506 | Hemagglutinin protein HagE; Cleaves human complement component C3. May enable P.gingivalis to evade complement-mediated killing during the immune response. Plays an important role in soft tissue infections and is a virulence factor; Belongs to the peptidase C25 family. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.901 |
| hmuY | prtRII | PG_1551 | PG_0506 | hmuY protein. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.541 |
| porR | porT | PG_1138 | PG_0751 | Pigmentation and extracellular proteinase regulator; Belongs to the DegT/DnrJ/EryC1 family. | porT protein. | 0.560 |
| porR | prtRII | PG_1138 | PG_0506 | Pigmentation and extracellular proteinase regulator; Belongs to the DegT/DnrJ/EryC1 family. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.552 |
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