STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_0545Hypothetical protein; Identified by Glimmer2; putative. (701 aa)    
Predicted Functional Partners:
PG_0544
Type I restriction-modification system, M subunit, putative.
 
 0.998
PG_1469
Type I restriction-modification system, M subunit, putative.
 
 
 0.910
PG_0947
Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF04313.
 
 
 0.643
PG_1696
Type II DNA modification methyltransferase, putative; Possibly an isoschizomer of LlaBIIM.
  
 
 0.565
PG_1512
Conserved domain protein.
  
    0.539
PG_1526
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.539
PG_0821
Lipoprotein, putative.
  
    0.529
PG_1452
Lipoprotein, putative.
  
    0.529
polA
DNA polymerase type I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.485
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.