Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PG_1069Alcohol dehydrogenase, zinc-containing, putative. (347 aa)    
Predicted Functional Partners:
PG_1068
Conserved hypothetical protein; Similar to SP:P13685, GB:D26562, GB:M20574, GB:S48039, PID:147117, PID:259663, PID:473802, GB:U00096, and PID:1786336; identified by sequence similarity; putative.
 
  
 0.989
kamD
D-lysine 5,6-aminomutase, alpha subunit.
 
 
 0.986
kamE
D-lysine 5,6-aminomutase, beta subunit.
 
  
 0.986
PG_1067
Conserved hypothetical protein; Similar to GP:19713115; identified by sequence similarity; putative.
 
   
 0.918
PG_0148
Sigma-54-dependent transcriptional regulator.
 
      0.892
PG_1071
Conserved hypothetical protein; Similar to GP:19713109; identified by sequence similarity; putative.
 
     0.871
PG_0747
Sigma-54 dependent DNA-binding response regulator; Similar to GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, PID:825686, GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, and PID:8256 [...]
 
      0.855
PG_0016
Sigma-54 dependent DNA-binding response regulator.
 
      0.748
PG_1072
MutS family protein; Similar to GB:S70527, GB:L37374, SP:P39748, GB:X76771, and PID:642090; identified by sequence similarity; putative.
 
    0.639
PG_1521
O-succinylbenzoic acid--CoA ligase; Similar to GB:L03728, SP:P22993, PID:147103, PID:152544, GB:X59798, GB:M73554, GB:S71637, SP:P24385, PID:179365, PID:181245, PID:307345, PID:312912, PID:35632, and PID:483601; identified by sequence similarity; putative.
  
 
 0.636
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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