STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1096Hypothetical protein; Identified by Glimmer2; putative. (360 aa)    
Predicted Functional Partners:
PG_1097
Mur ligase domain protein/alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.806
PG_0202
uroporphyrinogen-III synthase HemD, putative.
  
     0.594
PG_1622
DNA topoisomerase IV, A subunit, putative; Similar to SP:P00151; identified by sequence similarity; putative.
  
    0.577
PG_2216
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.552
PG_0649
Identified by match to PFAM protein family HMM PF03692.
  
     0.488
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.460
PG_2139
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.459
PG_0482
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.457
PG_2031
Identified by match to PFAM protein family HMM PF05146.
  
     0.443
PG_1095
RNA methyltransferase, TrmA family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.436
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.