STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1140Glycosyl transferase, group 2 family protein; Identified by match to TIGR protein family HMM TIGR01556. (286 aa)    
Predicted Functional Partners:
PG_1141
Glycosyl transferase, group 1 family protein.
  
    0.777
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.527
PG_1139
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.523
PG_0436
Capsular polysaccharide transport protein, putative.
  
  
 0.445
PG_1142
Exopolysaccharide synthesis-related protein.
  
    0.438
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.