STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1181Transcriptional regulator, tetR family. (199 aa)    
Predicted Functional Partners:
PG_1176
ABC transporter, ATP-binding protein, putative.
 
   
 0.829
PG_1175
ABC transporter, ATP-binding protein, putative.
 
   
 0.825
PG_1180
Membrane protein, putative; Similar to SP:P19371; identified by sequence similarity; putative.
 
     0.735
PG_1179
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.605
PG_1178
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.596
PG_1797
DNA-binding response regulator/sensor histidine kinase.
      
 0.517
PG_1870
Methlytransferase, UbiE/COQ5 family; Similar to SP:P11430, SP:P16529, GB:S51490, GB:D00217, and PID:262707; identified by sequence similarity; putative.
  
 
 
 0.451
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.444
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.