STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1221Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GB:X74801, GB:U17104, SP:P49368, PID:609308, and PID:671527; identified by sequence similarity; putative. (241 aa)    
Predicted Functional Partners:
pdxB
Erythronate-4-phosphate dehydrogenase, putative; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
  
    0.770
PG_1219
Hypothetical protein; Identified by Glimmer2; putative.
       0.762
PG_1317
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.560
PG_0543
Transcriptional regulator, putative; Identified by match to PFAM protein family HMM PF01381.
   
  
 0.543
PG_1167
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.541
PG_1662
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.529
polA
DNA polymerase type I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
  
 0.496
PG_2069
Oxidoreductase, short chain dehydrogenase/reductase family.
 
 
 0.465
PG_0174
Pyridine nucleotide-disulphide oxidoreductase family protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.425
PG_1218
Hypothetical protein; Identified by Glimmer2; putative.
       0.408
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.