STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1280Conserved hypothetical protein; Identified by Glimmer2; putative. (415 aa)    
Predicted Functional Partners:
PG_1279
D-isomer specific 2-hydroxyacid dehydrogenase family protein.
  
    0.767
gdh
Glutamate dehydrogenase, NAD-specific; Probably involved in degradation rather than biosynthesis of glutamate; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
 
      0.761
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.563
PG_1281
Hypothetical protein; Identified by Glimmer2; putative.
       0.496
PG_1282
Conserved hypothetical protein; Similar to GB:U22662, and PID:726513; identified by sequence similarity; putative.
       0.452
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.