STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmuYhmuY protein. (142 aa)    
Predicted Functional Partners:
hmuR
TonB-dependent receptor HmuR.
  
  
 0.901
PG_1553
CobN/magnesium chelatase family protein; Similar to SP:P17430, GB:X52093, GB:X52950, and PID:47743; identified by sequence similarity; putative.
  
    0.693
PG_1554
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.693
PG_1555
Conserved domain protein; Similar to SP:P36563, PID:434583, PID:466739, GB:U00096, PID:1790029, SP:P36563, PID:434583, PID:466739, GB:U00096, and PID:1790029; identified by sequence similarity; putative.
  
    0.618
PG_0668
TonB-dependent receptor.
  
  
 0.609
PG_1556
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.601
prtRII
Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable).
      
 0.541
hagA
Hemagglutinin protein HagA; Agglutinates erythrocytes.
      
 0.541
PG_0548
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein.
    
   0.441
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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