STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (196 aa)    
Predicted Functional Partners:
rfbB
dTDP-glucose 4,6-dehydratase; Similar to SP:P02345, GB:X04500, GB:M15330, GB:K02770, GB:M54933, GB:X02532, GB:X56087, GB:X52431, GB:M15840, SP:P01584, PID:186288, PID:307043, PID:307045, PID:312408, PID:33790, PID:35663, and PID:386816; identified by sequence similarity; putative; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.999
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 0.999
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.992
PG_1143
Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.858
PG_1903
Conserved hypothetical protein; Similar to GB:X58178, GB:U20101, GB:U20102, GB:U20103, GB:U20104, GB:X66816, and PID:47363; identified by sequence similarity; putative.
  
  
 0.804
PG_0160
Conserved domain protein; Similar to GB:D10483, SP:P11288, PID:216438, PID:537248, PID:1128976, GB:U00096, and PID:1786187; identified by sequence similarity; putative.
  
  
 0.688
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
     
 0.600
PG_0117
Polysaccharide transport protein, putative; Identified by match to TIGR protein family HMM TIGR01695.
  
  
 0.563
PG_0133
Identified by match to TIGR protein family HMM TIGR01695.
  
  
 0.563
PG_0489
Polysaccharide biosynthesis-related protein; Identified by match to TIGR protein family HMM TIGR01695.
  
  
 0.563
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.