STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapBDihydrodipicolinate reductase; Belongs to the DapB family. (238 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.991
lepB
Signal peptidase I; Similar to GB:X02747, GB:M15656, GB:M15657, GB:K01177, GB:X00270, SP:P05062, PID:178353, PID:178357, PID:2160383, PID:28420, PID:28617, and PID:563884; identified by sequence similarity; putative; Belongs to the peptidase S26 family.
  
    0.799
PG_2000
Signal peptidase-related protein; Similar to GB:X02747, GB:M15656, GB:M15657, GB:K01177, GB:X00270, SP:P05062, PID:178353, PID:178357, PID:2160383, PID:28420, PID:28617, and PID:563884; identified by sequence similarity; putative; Belongs to the peptidase S26 family.
  
    0.764
PG_1999
Conserved hypothetical protein; Similar to GB:U01032, and PID:393012; identified by sequence similarity; putative.
     
 0.755
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.742
PG_0801
polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.719
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.699
PG_1097
Mur ligase domain protein/alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
 
 0.664
lysC
Aspartate kinase; Similar to GB:L13923, GB:X63556, GB:L19896, SP:P35555, PID:1335064, and PID:306746; identified by sequence similarity; putative; Belongs to the aspartokinase family.
 
  
 0.621
dgt
Deoxyguanosinetriphosphate triphosphohydrolase; Similar to GB:X76942, GB:U41740, GB:X76942, PID:1213484, and PID:439656; identified by sequence similarity; putative.
       0.594
Your Current Organism:
Porphyromonas gingivalis
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.