STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10025Best DB hits: BLAST: pir:D83031; conserved hypothetical protein PA4926 [imported] -; E=4e-49 swissprot:Q50652; YP69_MYCTU HYPOTHETICAL 34.4 KDA PROTEIN RV2569C; E=2e-32 embl:CAA19100.1; (AL023591) hypothetical protein MLCB1259.25; E=4e-32 COG: PA4926; COG1305 Transglutaminase-like enzymes, putative cysteine; E=4e-50 PFAM: PF01841; Transglutaminase-like superfam; E=1.6e-20. (309 aa)    
Predicted Functional Partners:
RB10028
Best DB hits: BLAST: pir:S74601; hypothetical protein sll1039 - Synechocystis sp. (strain; E=2e-67 gb:AAC08422.1; (AF054525) hypothetical protein [Synechococcus sp; E=1e-61 pir:B75323; conserved hypothetical protein - Deinococcus radiodurans; E=1e-35 COG: sll1039; COG2307 Uncharacterized BCR; E=2e-68.
    0.982
RB10026
Best DB hits: BLAST: pir:E83031; conserved hypothetical protein PA4927 [imported] -; E=1e-107 embl:CAA17945.1; (AL022118) hypothetical protein MLCB1913.13; E=1e-94 swissprot:Q50654; YP67_MYCTU HYPOTHETICAL 95.4 KDA PROTEIN RV2567; E=4e-88 COG: PA4927_1; COG2308 Uncharacterized BCR; E=4e-78 PA4927_2; COG2307 Uncharacterized BCR; E=4e-23.
 
  
 0.965
RB10030
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:Q55587; Y335_SYNY3 HYPOTHETICAL 53.7 KDA PROTEIN SLL0335; E=1e-169 gb:AAC08421.1; (AF054525) hypothetical protein [Synechococcus sp; E=1e-160 pir:C83429; conserved hypothetical protein PA1730 [imported] -; E=1e-135 COG: sll0335; COG2308 Uncharacterized BCR; E=1e-170.
 
    0.881
RB10027
Conserved hypothetical protein-putative protease; Best DB hits: BLAST: pir:B70729; hypothetical protein Rv2566 - Mycobacterium tuberculosis; E=0.0 gb:AAD10833.1; (U49838) 72.2 KDa protein [Mycobacterium leprae]; E=1e-174 embl:CAA17944.1; (AL022118) hypothetical protein MLCB1913.12; E=1e-110 COG: Rv2566_1; COG1305 Transglutaminase-like enzymes, putative cysteine; E=6e-81 PFAM: PF01841; Transglutaminase-like superfam; E=2.7e-17.
 
    
0.642
RB10024
Hypothetical protein.
       0.608
RB655
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: swissprot:Q50653; YP68_MYCTU HYPOTHETICAL 38.0 KDA PROTEIN RV2568C; E=2e-35.
 
     0.468
RB10032
Hypothetical protein-signal peptide prediction.
       0.443
RB10033
Hypothetical protein.
       0.443
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.