Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10039Conserved hypothetical protein; Best DB hits: BLAST: gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=0.31 pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=0.47 pir:A72220; conserved hypothetical protein - Thermotoga maritima; E=0.11 COG: PA5257; COG3071 Uncharacterized enzyme of heme biosynthesis; E=0.007 PFAM: PF00515; TPR Domain; E=2.9e-05. (465 aa)    
Predicted Functional Partners:
mtrA
Best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=1e-04 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=0.001.
       0.773
RB10042
Hypothetical protein-signal peptide prediction.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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