Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtrABest DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=1e-04 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=0.001. (407 aa)    
Predicted Functional Partners:
RB10039
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=0.31 pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=0.47 pir:A72220; conserved hypothetical protein - Thermotoga maritima; E=0.11 COG: PA5257; COG3071 Uncharacterized enzyme of heme biosynthesis; E=0.007 PFAM: PF00515; TPR Domain; E=2.9e-05.
       0.773
RB12393
Best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.013.
  
     0.751
RB3376
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11474104.
  
     0.739
RB5756
Hypothetical protein-transmembrane prediction.
  
     0.633
RB1651
Conserved hypothetical protein-putative Fe-S oxidoreductases; PMID: 8688087 best DB hits: BLAST: swissprot:Q57970; Y550_METJA HYPOTHETICAL PROTEIN MJ0550 -----; E=2e-04 gb:AAG20125.1; (AE005091) Vng1941c [Halobacterium sp. NRC-1]; E=0.006 gb:AAB90230.1; (AE001034) conserved hypothetical protein; E=0.15 COG: MJ0550; COG1244 Predicted Fe-S oxidoreductases; E=2e-05.
  
     0.600
RB10042
Hypothetical protein-signal peptide prediction.
       0.572
RB1444
PMID: 10567266 best DB hits: BLAST: pir:C75341; tetratricopeptide repeat family protein - Deinococcus; E=9e-05 ddbj:BAA11643.2; (D82942) tetratricopeptide-repeat protein; E=1e-04 pir:E69078; conserved hypothetical protein MTH1585 -; E=0.006 COG: DR1891; COG0457 TPR-repeat-containing proteins; E=9e-06.
  
     0.559
RB413
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11997336.
  
     0.484
ogt
Conserved hypothetical protein containing TPR-repeats; PMID: 9083067 best DB hits: BLAST: swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=9e-05 gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=9e-05 gb:AAA62535.1; (U21320) contains TPR domain-like repeats; E=0.003 PFAM: PF00515; TPR Domain; E=0.00017.
 
     0.481
RB1900
Probable NusG-like protein-putative transcription activator; PMID: 9919671 best DB hits: BLAST: embl:CAA09920.1; (AJ012097) NusG-like protein [Myxococcus; E=3e-05 pir:G82255; probable transcription activator RfaH VC0990 [imported]; E=4e-04 embl:CAA10615.1; (AJ132239) transcriptional activator [Erwinia; E=0.019 COG: VC0990; COG0250 Transcription antiterminator; E=3e-05.
 
     0.478
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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