Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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RB10074Conserved hypothetical protein-putative SAM-dependent methyltransferase; Best DB hits: BLAST: pir:G69742; hypothetical protein ybaJ - Bacillus subtilis -----; E=7e-13 pir:E83313; conserved hypothetical protein PA2650 [imported] -; E=9e-12 pir:S76919; hypothetical protein - Synechocystis sp. (strain PCC; E=6e-04 COG: BS_ybaJ; COG0500 SAM-dependent methyltransferases; E=7e-14 XF2471; COG2227; E=0.004. (273 aa)    
Predicted Functional Partners:
apaH
Probable diadenosine tetraphosphatase; PMID: 3031429 best DB hits: BLAST: pir:C83259; hypothetical protein PA3087 [imported] - Pseudomonas; E=1e-54 ddbj:BAB06564.1; (AP001516) diadenosine tetraphosphatase; E=8e-10 embl:CAA11911.1; (AJ224354) protein serine-threonine phosphatase,; E=6e-08 COG: PA3087; COG0639 Diadenosine tetraphosphatase and related; E=1e-55.
   
   0.748
RB10075
Hypothetical protein-transmembrane prediction.
       0.532
RB13025
Probable monooxygenase; PMID: 1444267 best DB hits: BLAST: pir:D83229; probable FAD-dependent monooxygenase PA3328 [imported] -; E=1e-07 pir:H70986; probable hyroxylase - Mycobacterium tuberculosis (strain; E=2e-07 pir:T35323; probable hydroxylase - Streptomyces coelicolor -----; E=1e-06 COG: PA3328; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=1e-08 BS_yetM; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and; E=2e-04 PA2587; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=5e-04 PFAM: PF01360; Monooxygenase; E=2.8e-12.
  
 0.517
RB13026
Probable monooxygenase; PMID: 1444267 best DB hits: BLAST: pir:T37167; probable oxidoreductase - Streptomyces coelicolor; E=4e-08 gb:AAD25066.1; AF121000_13 (AF121000) oxidoreductase protein; E=0.001 pir:D83122; probable FAD-dependent monooxygenase PA4190 [imported] -; E=0.004 COG: PA4190; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=4e-04 PFAM: PF01360; Monooxygenase; E=0.33.
  
 0.517
RB1950
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.506
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
 
 0.506
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
  
 
 0.481
RB9262
Conserved hypothetical protein-putative NAD-dependent aldehyde dehydrogenase; Best DB hits: BLAST: embl:CAC04220.1; (AL391515) conserved hypothetical protein; E=1e-21 ddbj:BAA37083.1; (AB022095) ORF3 [Streptomyces griseus]; E=8e-13 pir:E70961; hypothetical protein Rv0223c - Mycobacterium; E=4e-06 COG: Rv0223c; COG1012 NAD-dependent aldehyde dehydrogenases; E=3e-07 PFAM: PF00171; Aldehyde dehydrogenase family; E=0.21.
  
 
   0.475
RB7538
Conserved hypothetical protein; PMID: 20406833 best DB hits: BLAST: pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.029 pir:T29127; hypothetical protein SC1F2.18 - Streptomyces coelicolor; E=0.18 pir:H69064; serinethreonine protein kinase related protein -; E=0.49 COG: VC0762; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.003 PFAM: PF01011; PQQ enzyme repeat; E=0.054.
  
     0.471
RB10067
Hypothetical protein-putative transmembrane protein.
       0.458
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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