STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10088Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAB07544.1; (AP001520) BH3825~unknown conserved protein; E=7e-27 swissprot:P39645; YWFI_BACSU HYPOTHETICAL 29.5 KD PROTEIN IN; E=5e-24 gb:AAG20186.1; (AE005095) Vng2021c [Halobacterium sp. NRC-1]; E=7e-24 COG: BH3825; COG3253 Uncharacterized ACR; E=7e-28. (372 aa)    
Predicted Functional Partners:
hemH
Probable ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
 
 0.978
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
  
  0.915
RB10085
Hypothetical protein.
       0.773
RB11922
Conserved hypothetical protein-putative membrane protein; PMID: 10086841 best DB hits: BLAST: ddbj:BAB06330.1; (AP001516) BH2611~unknown conserved protein; E=4e-08 pir:F69930; conserved hypothetical protein yozB - Bacillus subtilis; E=1e-07 swissprot:Q04453; YCT1_BACFI HYPOTHETICAL 21.0 KD PROTEIN IN CTAF; E=8e-07 COG: BH2611; COG2322 Predicted membrane protein; E=4e-09.
  
    0.609
hemY
Protoporphyrinogen IX and coproporphyrinogen III oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 0.565
RB5811
Conserved hypothetical protein; PMID: 11058132 best DB hits: BLAST: ddbj:BAB04428.1; (AP001509) BH0709~unknown conserved protein in; E=9e-05 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.53.
  
     0.453
RB10081
Best DB hits: BLAST: pir:G69815; ABC transporter (ATP-binding protein) homolog ygaD -; E=6e-66 gb:AAG49002.1; (AY013246) putative ABC transporter [Hordeum; E=4e-63 pir:A75590; ABC transporter, ATP-binding protein - Deinococcus; E=6e-63 COG: BS_ygaD; COG1132 ABC-type multidrug/protein/lipid transport system,; E=6e-67 PFAM: PF00664; ABC transporter transmembrane re; E=8.5e-30 PF02463; SMC domain N terminal domain; E=0.53 PF01202; Shikimate kinase; E=0.019.
       0.409
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.