STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10089Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB66289.1; (AL136519) hypothetical protein SCC57A.21c; E=3e-19 swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=4e-07 ddbj:BAB06034.1; (AP001515) myo-inositol catabolism [Bacillus; E=1e-06 COG: BS_iolI; COG1082 Predicted endonucleases; E=4e-08 PFAM: PF01542; Hepatitis C virus core protei; E=0.23. (272 aa)    
Predicted Functional Partners:
RB2640
Hypothetical protein-signal peptide prediction.
  
     0.644
RB11728
Conserved hypothetical protein-putative tagatose 3-epimerase; PMID: 8905231 PMID: 10561547 best DB hits: BLAST: swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=1e-25 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=2e-25 swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=3e-14 COG: sll1304; COG1082 Predicted endonucleases; E=1e-26.
  
     0.640
RB201
Sugar phosphate isomerase/epimerase; Best DB hits: BLAST: swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=4e-26 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=6e-13 swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=2e-12 COG: TM0416; COG1082 Predicted endonucleases; E=4e-27.
  
     0.599
RB10092
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Best DB hits: BLAST: ref:XP_002773.1; CGI-105 protein [Homo sapiens]; E=4e-56 gb:AAD34100.1; AF151863_1 (AF151863) CGI-105 protein [Homo; E=6e-56 gb:AAF55945.1; (AE003737) CG6028 gene product [Drosophila; E=3e-54 COG: BH2000; COG0179 2-keto-4-pentenoate; E=1e-45 PFAM: PF01557; Fumarylacetoacetate (FAA) hydro; E=5.1e-83.
       0.533
RB12038
Best DB hits: BLAST: ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=8e-91 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=5e-84 embl:CAB88965.1; (AL353864) putative oxidoreductase; E=3e-46 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=7e-92 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=7e-36 PF02894; Oxidoreductase family, C-termi; E=6.8e-06.
  
    0.532
RB5406
Carbohydrate kinase, FGGY family; PMID: 1659648 best DB hits: BLAST: gb:AAF01486.1; AF137263_5 (AF137263) L-fuculose kinase; E=1e-84 ddbj:BAB05270.1; (AP001512) rhamnulokinase [Bacillus halodurans]; E=3e-79 pir:E70014; rhamnulokinase (EC 2.7.1.5) yulC - Bacillus subtilis; E=8e-75 COG: BH1551; COG1070 Sugar (pentulose and hexulose) kinases; E=2e-80 VNG1967G; COG0554 Glycerol kinase; E=2e-04 BH2676; COG1070 Sugar (pentulose and hexulose) kinases; E=0.004 PFAM: PF00370; FGGY family of carbohydrate kin; E=7.3e-12 PF02782; FGGY family of carbohydrate kin; E=0.11.
 
     0.521
sgaU
Probable hexulose-6-phosphate isomerase; PMID: 7610040 best DB hits: BLAST: swissprot:Q58707; YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----; E=0.004 swissprot:P39305; SGAU_ECOLI PUTATIVE HEXULOSE-6-PHOSPHATE; E=0.004 gb:AAG59393.1; AE005652_10 (AE005652) putative; E=0.004 COG: MJ1311; COG1082 Predicted endonucleases; E=4e-04 PFAM: PF02199; Saposin A-type domain; E=0.63.
  
     0.501
RB3239
Probable D-tagatose 3-epimerase; Best DB hits: BLAST: swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=4e-13 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=8e-11 swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=4e-10 COG: TM0416; COG1082 Predicted endonucleases; E=4e-14.
  
     0.475
lolI
Probable IolI protein; PMID: 7952181 best DB hits: BLAST: swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=3e-12 ddbj:BAB06034.1; (AP001515) myo-inositol catabolism [Bacillus; E=1e-08 pir:D83615; hypothetical protein PA0242 [imported] - Pseudomonas; E=1e-05 COG: BS_iolI; COG1082 Predicted endonucleases; E=3e-13.
  
     0.437
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.