STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10103Conserved hypothetical protein containing the kelch-motif; PMID: 10888605 best DB hits: BLAST: gb:AAF81717.1; AF252281_1 (AF252281) Kelch-like 1 protein [Mus; E=2e-09 gb:AAD39007.1; AF156857_1 (AF156857) actin-binding protein [Homo; E=3e-09 gb:AAK00278.1; AF285178_1 (AF285178) actin-binding protein MIPP; E=3e-08 COG: HI0148; COG3055 Uncharacterized BCR; E=9e-06 PFAM: PF01344; Kelch motif; E=0.0021. (563 aa)    
Predicted Functional Partners:
RB2226
PMID: 7557402 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=7e-18 swissprot:P49695; PKWA_THECU PUTATIVE SERINETHREONINE-PROTEIN; E=4e-13 gb:AAG40737.1; AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]; E=2e-12 COG: slr0143_2; COG2319 WD40 repeat protein; E=2e-09 PFAM: PF00400; WD domain, G-beta repeat; E=0.2 PF01011; PQQ enzyme repeat; E=0.66 PF00400; WD domain, G-beta repeat; E=0.12.
  
     0.680
RB2231
Hypothetical protein.
  
     0.628
RB3324
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12004073.
  
     0.590
RB9875
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG52354.1; AC011765_6 (AC011765) unknown protein; E=2e-36 gb:AAD55271.1; AC008263_2 (AC008263) ESTs gb AA067482 and gb; E=4e-34 gb:AAD25827.1; AC006951_6 (AC006951) hypothetical protein; E=1e-29 COG: TM0864; COG1234 Metal-dependent hydrolases of the beta-lactamase; E=8e-06 PFAM: PF02112; cAMP phosphodiesterases class-; E=0.25 PF00753; Metallo-beta-lactamase superfa; E=0.036.
  
     0.590
RB1420
Hypothetical protein-transmembrane region and signal peptide prediction.
  
     0.563
RB1386
Similar to nucleoside hydrolase; PMID: 10984043 best DB hits: BLAST: pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.062 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.006 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.52.
  
     0.535
tolB
Probable TolB protein; PMID: 8955385 best DB hits: BLAST: embl:CAB60199.1; (AJ250881) P1a6 protein [Haemonchus contortus]; E=5e-29 gb:AAB01192.1; (U55864) apical gut membrane polyprotein; E=8e-29 pir:T19607; hypothetical protein C31C9.1 - Caenorhabditis elegans; E=8e-27 COG: XF0820; COG2234 Predicted aminopeptidases; E=2e-11 RP302; COG0823 Periplasmic component of the Tol biopolymer transport; E=1e-07 PA0972; COG0823 Periplasmic component of the Tol biopolymer; E=2e-06 PFAM: PF02787; Carbamoyl-phosphate synthetase; E=0.2 PF01546; Peptidase family M20/M25/M40; E=0.61 PF00595; PDZ domain [...]
 
     0.530
RB9955
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF01676; Metalloenzyme superfamily; E=0.78.
  
     0.520
RB9957
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.511
RB10099
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.505
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.