Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10107Hypothetical protein. (50 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III, beta chain; PMID: 2540413 best DB hits: BLAST: swissprot:P13455; DP3B_PSEPU DNA POLYMERASE III, BETA CHAIN; E=1e-31 pir:C81713; DNA polymerase III, beta chain TC0347 [imported] -; E=1e-29 pir:E71559; probable DNA pol III (beta chain) - Chlamydia; E=1e-29 COG: CT075; COG0592 DNA polymerase III beta subunit; E=1e-30 PFAM: PF00712; DNA polymerase III beta subun; E=7.1e-16 PF02767; DNA polymerase III beta subun; E=2.4e-12 PF02768; DNA polymerase III beta subun; E=1e-10.
       0.564
RB10109
Best DB hits: BLAST: pir:D72328; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.18.
       0.564
cutA
Probable periplasmic divalent cation tolerance protein (cutA); Best DB hits: BLAST: gb:AAF48350.1; (AE003495) CG11590 gene product [Drosophila; E=7e-12 gb:AAB89277.1; (AE000966) periplasmic divalent cation tolerance; E=2e-11 pir:C69068; divalent cation tolerance protein - Methanobacterium; E=2e-11 COG: AF1978; COG1324 Uncharacterized protein involved in tolerance to; E=2e-12.
       0.528
RB10105
Hypothetical protein.
       0.447
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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