STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1012Hypothetical protein. (50 aa)    
Predicted Functional Partners:
RB1009
Response regulator; PMID: 11123673 best DB hits: BLAST: pir:A75484; conserved hypothetical protein - Deinococcus radiodurans; E=2e-24 pir:D72252; conserved hypothetical protein - Thermotoga maritima; E=1e-23 embl:CAB89843.1; (AJ251547) response regulator [Xanthomonas; E=2e-23 COG: DR0719; COG2206 HD-GYP domain; E=2e-25 PFAM: PF01966; HD domain; E=7.2e-08.
       0.592
RB1010
Hypothetical protein.
       0.592
RB1005
Conserved hypothetical protein-putative glycosyltransferase; PMID: 11016950 best DB hits: BLAST: gb:AAG18863.1; (AE004989) Vng0271c [Halobacterium sp. NRC-1]; E=7e-30 gb:AAG45169.1; AF317883_1 (AF317883) unknown [Synechococcus sp; E=8e-20 pir:T45180; hypothetical protein u1756l [imported] - Mycobacterium; E=0.026 COG: VNG0271C; COG0463 Glycosyltransferases involved in cell wall; E=7e-31.
       0.448
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.