Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10140Best DB hits: BLAST: pir:B82127; sulfate permease family protein VC2031 [imported] -; E=1e-89 pir:G83325; probable sulfate transporter PA2563 [imported] -; E=5e-53 ddbj:BAB04133.1; (AP001508) sulfate permease [Bacillus; E=1e-51 COG: VC2031; COG0659 Sulfate permease and related transporters (MFS; E=1e-90 PFAM: PF00916; Sulfate transporter family; E=9.5e-12 PF00955; HCO3- transporter family; E=0.86 PF00916; Sulfate transporter family; E=4.5e-54. (606 aa)    
Predicted Functional Partners:
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
   
 
 0.765
RB10139
Hypothetical protein.
       0.550
dagA
Putative Na(+)-linked D-alanine glycine permease; PMID: 1447975 best DB hits: BLAST: embl:CAC01597.1; (AL391041) putative amino acid transport; E=1e-90 gb:AAF12563.1; AE001826_32 (AE001826) Na(+)-linked D-alanine; E=5e-81 ddbj:BAB07752.1; (AP001520) amino acid transporter [Bacillus; E=4e-46 COG: DRB0133; COG1115 Na+/alanine symporter; E=4e-82 PFAM: PF02497; Arterivirus glycoprotein; E=0.45 PF00746; Gram positive anchor; E=0.031 PF01235; Sodium:alanine symporter fami; E=5.2e-96.
  
     0.478
RB1021
Probable DNA repair exonuclease; PMID: 9384377 best DB hits: BLAST: pir:A69819; probable phosphoesterase (EC 3.1.-.-) yhaO - Bacillus; E=6e-12 COG: BS_yhaO; COG0420 DNA repair exonuclease; E=5e-13 PFAM: PF02549; DNA repair exonuclease; E=6.5e-05.
   
   0.407
RB10663
Best DB hits: BLAST: pir:A69819; probable phosphoesterase (EC 3.1.-.-) yhaO - Bacillus; E=3e-31 pir:E75103; DNA repair protein rad32 (rad32) PAB0811 - Pyrococcus; E=6e-07 gb:AAG60901.1; AF322013_20 (AF322013) ID473 [Bradyrhizobium; E=1e-05 COG: BS_yhaO; COG0420 DNA repair exonuclease; E=3e-32 PFAM: PF02549; DNA repair exonuclease; E=5.9e-18.
   
   0.407
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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