STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10164Conserved hypothetical protein-putative sigma factor; PMID: 12024217 best DB hits: BLAST: pir:T02748; hypothetical protein R31180_1 - human ----- gb:; E=0.38. (192 aa)    
Predicted Functional Partners:
pknB-2
Probable serine/threonine-protein kinase pknB; PMID: 835671 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=3e-34 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=5e-33 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=9e-32 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=5e-34 PFAM: PF00069; Protein kinase domain; E=1.3e-46 PF00400; WD domain, G-beta repeat; E=0.00029.
 
 
   0.930
RB631
Serine/threonine protein kinase; PMID: 7768349 best DB hits: BLAST: pir:T42100; serinethreonine protein kinase (EC 2.7.1.-) -; E=5e-32 pir:T36502; serinethreonine protein kinase - Streptomyces; E=8e-32 swissprot:P33973; PKN1_MYXXA SERINETHREONINE-PROTEIN KINASE PKN1; E=2e-28 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-29 PFAM: PF00069; Protein kinase domain; E=7e-46 PF00591; Glycosyl transferase family,; E=0.28 PF00515; TPR Domain; E=0.0037.
  
 
   0.750
RB12310
Serine/threonine-protein kinase; PMID: 1835671 PMID: 7768349 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=2e-35 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=2e-35 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=1e-32 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=2e-36 PFAM: PF00069; Protein kinase domain; E=8.9e-53.
  
 
   0.740
RB10165
Similar to polyhydroxyalkanoate depolymerase precursor; PMID: 7836292 best DB hits: BLAST: gb:AAA65703.1; (U12976) polyhydroxyalkanoate depolymerase; E=0.16 swissprot:P52090; PHA1_PSELE POLY(3-HYDROXYALKANOATE) DEPOLYMERASE; E=0.53 PFAM: PF01841; Transglutaminase-like superfam; E=0.00014.
 
     0.692
RB10167
Hypothetical protein.
       0.579
RB10168
Hypothetical protein.
       0.579
RB1651
Conserved hypothetical protein-putative Fe-S oxidoreductases; PMID: 8688087 best DB hits: BLAST: swissprot:Q57970; Y550_METJA HYPOTHETICAL PROTEIN MJ0550 -----; E=2e-04 gb:AAG20125.1; (AE005091) Vng1941c [Halobacterium sp. NRC-1]; E=0.006 gb:AAB90230.1; (AE001034) conserved hypothetical protein; E=0.15 COG: MJ0550; COG1244 Predicted Fe-S oxidoreductases; E=2e-05.
  
     0.553
RB6211
Conserved hypothetical protein; PMID: 11474104 best DB hits: BLAST: embl:CAB53476.1; (AJ245900) CAA30373.1 protein [Oryza sativa]; E=0.023 pir:B70126; surface-located membrane protein 1 (lmp1) homolog - Lyme; E=0.091 gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.093 COG: BB0210; COG0457 TPR-repeat-containing proteins; E=0.008 PFAM: PF00515; TPR Domain; E=0.00026.
  
     0.456
RB5756
Hypothetical protein-transmembrane prediction.
  
     0.448
cysM
Cysteine synthase B; PMID: 2188958 best DB hits: BLAST: swissprot:P16703; CYSM_ECOLI CYSTEINE SYNTHASE B (O-ACETYLSERINE; E=1e-30 pir:D82758; cysteine synthase XF0831 [imported] - Xylella fastidiosa; E=1e-30 swissprot:P95230; CYSK_MYCTU CYSTEINE SYNTHASE A (O-ACETYLSERINE; E=2e-30 COG: cysM; COG0031 Cysteine synthase; E=1e-31 PFAM: PF00291; Pyridoxal-phosphate dependent enzyme; E=5.9e-51.
  
    0.442
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.