STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10165Similar to polyhydroxyalkanoate depolymerase precursor; PMID: 7836292 best DB hits: BLAST: gb:AAA65703.1; (U12976) polyhydroxyalkanoate depolymerase; E=0.16 swissprot:P52090; PHA1_PSELE POLY(3-HYDROXYALKANOATE) DEPOLYMERASE; E=0.53 PFAM: PF01841; Transglutaminase-like superfam; E=0.00014. (1048 aa)    
Predicted Functional Partners:
RB10167
Hypothetical protein.
       0.773
RB10168
Hypothetical protein.
       0.773
RB10164
Conserved hypothetical protein-putative sigma factor; PMID: 12024217 best DB hits: BLAST: pir:T02748; hypothetical protein R31180_1 - human ----- gb:; E=0.38.
 
     0.692
pknB-2
Probable serine/threonine-protein kinase pknB; PMID: 835671 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=3e-34 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=5e-33 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=9e-32 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=5e-34 PFAM: PF00069; Protein kinase domain; E=1.3e-46 PF00400; WD domain, G-beta repeat; E=0.00029.
       0.580
RB6190
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAC24059.1; (AL512981) Hypothetical [Sulfolobus; E=0.17.
 
     0.580
RB9732
Probable gluconolactonase precursor-hypothetical secreted or membrane associated protein; Best DB hits: BLAST: pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=4e-05 embl:CAB59581.1; (AL132662) possible gluconolactonase precursor; E=0.028 pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=0.036 COG: XF1297; COG3386 Uncharacterized protein; E=4e-06 PA2451; COG2382 Enterochelin esterase and related enzymes; E=0.003.
 
 
   0.572
cysM
Cysteine synthase B; PMID: 2188958 best DB hits: BLAST: swissprot:P16703; CYSM_ECOLI CYSTEINE SYNTHASE B (O-ACETYLSERINE; E=1e-30 pir:D82758; cysteine synthase XF0831 [imported] - Xylella fastidiosa; E=1e-30 swissprot:P95230; CYSK_MYCTU CYSTEINE SYNTHASE A (O-ACETYLSERINE; E=2e-30 COG: cysM; COG0031 Cysteine synthase; E=1e-31 PFAM: PF00291; Pyridoxal-phosphate dependent enzyme; E=5.9e-51.
       0.567
RB10078
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.526
RB6145
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=9e-10 pir:A75265; ferric enterobactin esterase-related protein -; E=4e-05 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=0.004 COG: PA2451; COG2382 Enterochelin esterase and related enzymes; E=9e-11.
 
 
   0.520
RB577
Probable polymorphic membrane protein B/C family; PMID: 10684935 best DB hits: BLAST: pir:G71518; hypothetical protein pmpB - Chlamydia trachomatis; E=4e-07 pir:C81675; polymorphic membrane protein BC family TC0694; E=2e-06 gb:AAG57362.1; AE005455_3 (AE005455) putative ATP-binding; E=3e-05 PFAM: PF02415; Chlamydia protein of unknown functio; E=0.076.
  
     0.461
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.