STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10177Best DB hits: BLAST: pir:A72312; conserved hypothetical protein - Thermotoga maritima; E=4e-47 pir:S74581; hypothetical protein slr1411 - Synechocystis sp. (strain; E=1e-41 pir:E69014; hypothetical protein MTH1109 - Methanobacterium; E=6e-37 COG: TM0964; COG1641 Uncharacterized ACR; E=4e-48 PFAM: PF01969; Protein of unknown function DUF111; E=6.1e-89; Belongs to the LarC family. (396 aa)    
Predicted Functional Partners:
RB5730
Conserved hypothetical protein-putative ATP-utilizing enzyme; PMID: 8905231 best DB hits: BLAST: swissprot:P73846; YH17_SYNY3 HYPOTHETICAL 30.2 KD PROTEIN SLR1717; E=1e-37 gb:AAB89691.1; (AE000995) conserved hypothetical protein; E=3e-28 pir:C72312; conserved hypothetical protein - Thermotoga maritima; E=7e-28 COG: slr1717; COG1606 ATP-utilizing enzymes of the PP-loop superfamily; E=1e-38 PFAM: PF00764; Arginosuccinate synthase; E=0.042.
  
 0.984
purE-2
Conserved hypothetical protein-putative phosphoribosylcarboxyaminoimidazole mutase (purE); PMID: 98049343 PMID: 8809759 best DB hits: BLAST: gb:AAB89969.1; (AE001016) conserved hypothetical protein; E=4e-29 pir:S76797; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-28 gb:AAD29318.1; AF117208_1 (AF117208) circadian phase modifier; E=2e-24 COG: AF1275; COG1691 NCAIR mutase (PurE)-related proteins; E=4e-30.
 
  
 0.921
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
 
      0.674
RB10178
Hypothetical protein.
       0.628
RB10179
Hypothetical protein-transmembrane prediction.
       0.569
RB10175
Best DB hits: BLAST: pir:E83192; hypothetical protein PA3615 [imported] - Pseudomonas; E=2e-63 embl:CAC01341.1; (AL390975) hypothetical protein [Streptomyces; E=8e-33 pir:C81216; conserved hypothetical protein NMB0283 [imported] -; E=5e-29 COG: PA3615; COG1611 Predicted Rossmann fold nucleotide-binding protein; E=2e-64.
       0.544
RB10494
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAC15080.1; (L37087) HrmA [Nostoc sp.]; E=5e-25 pir:E72377; conserved hypothetical protein - Thermotoga maritima; E=5e-23.
 
  
 0.507
RB10180
Peptidase; Best DB hits: BLAST: ddbj:BAB06575.1; (AP001516) peptidase [Bacillus halodurans]; E=1e-133 pir:T44581; thimet oligopeptidase (EC 3.4.24.15) [imported] -; E=1e-133 swissprot:O31605; PEPF_BACSU OLIGOENDOPEPTIDASE F HOMOLOG -----; E=1e-133 COG: BH2856; COG1164 Oligoendopeptidase F; E=1e-134 PFAM: PF01432; Peptidase family M3; E=2.5e-94.
       0.425
rbsA
PMID: 7921236 best DB hits: BLAST: swissprot:P36947; RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN; E=4e-92 embl:CAB66285.1; (AL136519) ABC transporter protein, ATP binding; E=2e-90 gb:AAK05735.1; AE006394_5 (AE006394) ribose ABC transporter ATP; E=1e-89 COG: BS_rbsA; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=4e-93 PFAM: PF02239; Cytochrome D1 heme domain; E=0.31 PF00005; ABC transporter; E=3e-50.
       0.417
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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