Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10180Peptidase; Best DB hits: BLAST: ddbj:BAB06575.1; (AP001516) peptidase [Bacillus halodurans]; E=1e-133 pir:T44581; thimet oligopeptidase (EC 3.4.24.15) [imported] -; E=1e-133 swissprot:O31605; PEPF_BACSU OLIGOENDOPEPTIDASE F HOMOLOG -----; E=1e-133 COG: BH2856; COG1164 Oligoendopeptidase F; E=1e-134 PFAM: PF01432; Peptidase family M3; E=2.5e-94. (602 aa)    
Predicted Functional Partners:
rbsA
PMID: 7921236 best DB hits: BLAST: swissprot:P36947; RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN; E=4e-92 embl:CAB66285.1; (AL136519) ABC transporter protein, ATP binding; E=2e-90 gb:AAK05735.1; AE006394_5 (AE006394) ribose ABC transporter ATP; E=1e-89 COG: BS_rbsA; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=4e-93 PFAM: PF02239; Cytochrome D1 heme domain; E=0.31 PF00005; ABC transporter; E=3e-50.
       0.773
RB10179
Hypothetical protein-transmembrane prediction.
       0.550
metX
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; In the C-terminal section; belongs to the MetW family.
  
    0.536
RB10178
Hypothetical protein.
       0.500
purB
Adenylosuccinate lyase; PMID: 96015068 PMID: 2111814 best DB hits: BLAST: gb:AAB60684.1; (U20225) adenylosuccinate lyase [Mus musculus]; E=1e-144 gb:AAC83935.1; (AF106656) adenylosuccinate lyase [Homo sapiens]; E=1e-140 gb:AAH00253.1; AAH00253 (BC000253) adenylosuccinate lyase [Homo; E=1e-140 COG: YLR359w; COG0015 Adenylosuccinate lyase; E=1e-132 PFAM: PF00206; Lyase; E=2.5e-57; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.461
ribD
PMID: 9068650 best DB hits: BLAST: pir:T50546; riboflavin bifunctional biosynthesis protein ribG; E=2e-56 swissprot:P50853; RIBD_ACTPL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD; E=2e-56 ddbj:BAB05273.1; (AP001512) riboflavin specific; E=9e-52 COG: ribD_1; COG0117 Pyrimidine deaminase; E=1e-28 BH1554_2; COG1985 Pyrimidine reductase, riboflavin biosynthesis; E=6e-21 CPn0871_1; COG0117 Pyrimidine deaminase; E=1e-20 PFAM: PF00383; Cytidine and deoxycytidylate de; E=1.5e-31 PF01872; RibD C-terminal domain; E=4e-33.
   
    0.456
RB10177
Best DB hits: BLAST: pir:A72312; conserved hypothetical protein - Thermotoga maritima; E=4e-47 pir:S74581; hypothetical protein slr1411 - Synechocystis sp. (strain; E=1e-41 pir:E69014; hypothetical protein MTH1109 - Methanobacterium; E=6e-37 COG: TM0964; COG1641 Uncharacterized ACR; E=4e-48 PFAM: PF01969; Protein of unknown function DUF111; E=6.1e-89; Belongs to the LarC family.
       0.426
pepT
Aminopeptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
  
 0.414
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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