Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10196Best DB hits: BLAST: pir:S76571; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-06 pir:C72255; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-05 swissprot:P38527; RHO_THEMA TRANSCRIPTION TERMINATION FACTOR RHO; E=0.71 COG: sll0185; COG3330 Uncharacterized BCR; E=1e-07. (436 aa)    
Predicted Functional Partners:
RB10195
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.004 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=0.013 ddbj:BAB04428.1; (AP001509) BH0709~unknown conserved protein in; E=0.39.
       0.773
RB10199
Hypothetical protein.
       0.773
RB6233
Hypothetical protein.
  
     0.743
RB1216
Probable permease component of an ABC-transporter; PMID: 9403685 best DB hits: BLAST: pir:H70193; membrane spanning protein homolog - Lyme disease; E=6e-04 gb:AAD39630.1; AF033858_13 (AF033858) putative ABC transporter; E=0.074 pir:D69049; conserved hypothetical protein MTH1371 -; E=0.15 COG: BB0753; COG1277 Permease component of an ABC-transporter; E=5e-05.
  
     0.739
RB10354
Hypothetical protein-putative transmembrane protein.
  
     0.738
RB9120
Conserved hypothetical protein-possibly contains sugar binding site; Best DB hits: BLAST: pir:T36406; hypothetical protein SCF34.07 - Streptomyces coelicolor; E=1e-06 pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=7e-04 pir:C75617; probable oxidoreductase - Deinococcus radiodurans; E=0.022 COG: DR1257; COG2133 Glucose/sorbosone dehydrogenases; E=7e-05 PFAM: PF02837; Glycosyl hydrolases family 2,; E=0.00037 PF00034; Cytochrome c; E=0.0092.
  
     0.738
RB2247
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG19229.1; (AE005019) Vng0754c [Halobacterium sp. NRC-1]; E=9e-06 gb:AAF75279.1; AF265353_1 (AF265353) byssal protein Dpfp1; E=0.21 ddbj:BAA94345.1; (AB035520) parchorin [Oryctolagus cuniculus]; E=0.50 PFAM: PF00089; Trypsin; E=0.58.
  
     0.730
RB10473
Best DB hits: BLAST: pir:D71687; alkaline proteinase secretion protein apre (aprE) RP314; E=0.032 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=0.053 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=0.13 COG: RP314; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF01590; GAF domain; E=0.00029 PF00364; Biotin-requiring enzyme; E=0.0022.
  
     0.721
RB6971
Hypothetical protein.
  
     0.715
RB2420
Probable myo-inositol-2-dehydrogenase; Best DB hits: BLAST: gb:AAD50452.1; AF170704_2 (AF170704) SpcB [Streptomyces; E=1e-04 gb:AAF63338.1; AF244574_1 (AF244574) myo-inositol-2-dehydrogenase; E=3e-04 gb:AAD13550.1; (AF080235) oxidoreductase homolog [Streptomyces; E=0.001 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=2e-04 PFAM: PF01408; Oxidoreductase family, NAD-bind; E=5.8e-11.
  
     0.699
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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