STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yidJPutative sulfatase yidj; PMID: 10336424 best DB hits: BLAST: gb:AAG58881.1; AE005599_13 (AE005599) putative sulfatase; E=5e-29 swissprot:P31447; YIDJ_ECOLI PUTATIVE SULFATASE YIDJ -----; E=1e-28 pir:E83642; choline sulfatase PA0031 [imported] - Pseudomonas; E=1e-27 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=1e-29 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=9e-06 VNG1337C; COG3119 Arylsulfatase A and related enzymes; E=2e-04 PFAM: PF00884; Sulfatase; E=9.3e-36. (527 aa)    
Predicted Functional Partners:
pyn
Pyrimidine-nucleoside phosphorylase (PYNP); PMID: 8987664 PMID: 9817849 PMID: 8987664 best DB hits: BLAST: pdb:1BRW; B Chain B, The Crystal Structure Of Pyrimidine; E=3e-70 swissprot:P77836; PDP_BACST PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE; E=3e-69 swissprot:O53366; DEOA_MYCTU THYMIDINE PHOSPHORYLASE (TDRPASE); E=1e-68 COG: Rv3314c; COG0213 Thymidine phosphorylase; E=1e-69 PFAM: PF02885; Glycosyl transferase family,; E=1.4e-15 PF00591; Glycosyl transferase family,; E=6.1e-39.
       0.553
RB10235
Conserved hypothetical protein-putative hydrolase; Best DB hits: BLAST: pir:G83172; hypothetical protein PA3783 [imported] - Pseudomonas; E=9e-28 pir:G69776; conserved hypothetical protein yddQ - Bacillus subtilis; E=9e-15 ddbj:BAB11178.1; (AB007648) gene_id:MKD15.9~pir C72413~similar to; E=2e-13 COG: PA3783; COG1335 Amidases related to nicotinamidase; E=9e-29 TM0133; COG1535 2,3-Dihydro-2,3 dihydroxybenzoate synthase; E=2e-06 AF2151; COG1335 Amidases related to nicotinamidase; E=2e-06 PFAM: PF00857; Isochorismatase family; E=5.7e-11.
  
    0.433
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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