STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10276Hypothetical protein-transmembrane prediction. (238 aa)    
Predicted Functional Partners:
RB9201
Conserved hypothetical protein-putative secreted protein; Best DB hits: BLAST: pir:E72310; hypothetical protein - Thermotoga maritima (strain MSB8); E=8e-06 pir:F83085; conserved hypothetical protein PA4489 [imported] -; E=9e-06 ddbj:BAA12317.1; (D84339) murinoglobulin [Cavia porcellus]; E=9e-05 COG: TM0984; COG2373 Large extracellular alpha-helical protein; E=8e-07.
  
     0.740
RB6586
Best DB hits: BLAST: pir:C75548; hypothetical protein - Deinococcus radiodurans (strain; E=0.005.
  
     0.678
RB10272
Pteridine reductase 1-possibly short-chain dehydrogenase; Best DB hits: BLAST: pir:B82680; pteridine reductase 1 XF1457 [imported] - Xylella; E=4e-27 swissprot:P50161; VER1_ASPPA VERSICOLORIN REDUCTASE (VER-1); E=8e-23 swissprot:Q08632; SDR1_PICAB SHORT-CHAIN TYPE; E=9e-22 COG: XF1457; COG1028 Dehydrogenases with different specificities (related; E=4e-28 PAB1085; COG1028 Dehydrogenases with different specificities; E=1e-20 BH1511; COG1028 Dehydrogenases with different specificities (related; E=2e-19 PFAM: PF00106; short chain dehydrogenase; E=3.1e-32 PF00678; Short chain dehydrogenase/ [...]
       0.655
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
       0.655
RB5211
Hypothetical protein.
  
     0.652
RB268
Best DB hits: BLAST: pir:H75286; hypothetical protein - Deinococcus radiodurans (strain; E=5e-11 COG: DR2326; COG2314 Predicted membrane protein; E=1e-11.
  
     0.598
pepX
PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13.
  
     0.580
pykA
Pyruvate kinase; PMID: 9387221 best DB hits: BLAST: ddbj:BAB06882.1; (AP001517) pyruvate kinase [Bacillus halodurans]; E=4e-82 swissprot:P80885; KPYK_BACSU PYRUVATE KINASE (PK) (VEGETATIVE; E=6e-80 swissprot:P51181; KPYK_BACLI PYRUVATE KINASE (PK) ----- pir:; E=1e-79 COG: BH3163_1; COG0469 Pyruvate kinase; E=4e-83 PFAM: PF00478; IMP dehydrogenase; Belongs to the pyruvate kinase family.
       0.543
RB736
Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019.
  
     0.489
rnH
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.451
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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