STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10300Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: BLAST: gb:AAG19252.1; (AE005021) plastocyanin homology; Pcy; E=0.67. (1043 aa)    
Predicted Functional Partners:
kel
Ring canal kelch protein; PMID: 8453663 PMID: 9118811 best DB hits: BLAST: gb:AAF53651.1; (AE003657) kel gene product [Drosophila; E=8e-17 swissprot:Q04652; KELC_DROME RING CANAL KELCH PROTEIN [CONTAINS:; E=8e-17 gb:AAA53471.1; (L08483) ring canal protein [Drosophila; E=1e-15 PFAM: PF01344; Kelch motif; E=2.6e-07.
 
     0.942
RB5424
Iduronate-2-sulfatase; PMID: 8244397 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=5e-57 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=2e-56 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=5e-54 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=1e-30 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=9e-05 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=0.001 PFAM: PF00884; Sulfatase; E=2.6e-28 PF02418; Integral membrane protein of unknow; E=0.71 PF00884; Sulfatase; E=3 [...]
  
     0.684
RB2702
Kappa-carrageenase [precursor]; PMID: 8112578 best DB hits: BLAST: swissprot:P43478; CGKA_ALTCA KAPPA-CARRAGEENASE PRECURSOR -----; E=1e-61 gb:AAC27890.1; (AF007559) kappa-carrageenase precursor [Zobellia; E=3e-56 pir:T18265; endo-1,3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium; E=8e-07 COG: TM0024; COG2273 Beta-glucanase/Beta-glucan synthetase; E=1e-05 PFAM: PF00722; Glycosyl hydrolases family 16; E=4.5e-07.
  
     0.673
RB5280
Similar to extracellular sucrase; PMID: 7778976 PMID: 8086457 PMID: 11722934 best DB hits: BLAST: pir:S47527; extracellular sucrase - Zymomonas mobilis ----- prf:; E=0.10 swissprot:Q60115; INVB_ZYMMO EXTRACELLULAR SUCRASE; E=0.24 gb:AAC36942.1; (L33403) extracellular sucrase [Zymomonas mobilis]; E=0.24.
  
     0.660
RB13146
Conserved hypothetical protein-putative xylosidase/arabinosidase; PMID: 8843436 best DB hits: BLAST: embl:CAB61805.1; (AL133236) hypothetical protein SCE65.17c; E=5e-41 ddbj:BAB05597.1; (AP001513) BH1878~unknown conserved protein; E=0.003 gb:AAB97967.1; (AF040720) xylosidasearabinosidase [Selenomonas; E=0.010; Belongs to the glycosyl hydrolase 43 family.
  
     0.658
RB10149
Best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26.
  
   0.624
RB8835
Probable secreted alkaline phosphatase (fragment); Best DB hits: BLAST: embl:CAB99170.1; (AL390188) putative secreted alkaline; E=0.003 embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=0.004 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=0.10 PFAM: PF02908; Purple acid phosphatase, N-term; E=0.89 PF00041; Fibronectin type III domain; E=0.42.
  
     0.602
RB12305
PMID: 10048488 best DB hits: BLAST: ddbj:BAB10826.1; (AB016892) receptor protein kinase-like protein; E=0.011 embl:CAB51834.1; (AJ243961) contains eukaryotic protein kinase; E=0.057 gb:AAG50525.1; AC084221_7 (AC084221) hypothetical protein; E=0.28.
  
     0.593
RB12586
Hypothetical protein.
  
     0.586
RB505
Similar to myosin heavy chain; PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19.
  
     0.577
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.