STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndhFNADH subunit 5; PMID: 3035337 best DB hits: BLAST: gb:AAG09461.1; AF217811_11 (AF217811) NADH subunit 5 [Tupaia; E=3e-29 swissprot:P50368; NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN; E=4e-29 embl:CAA50887.1; (X72004) NADH-ubiquinone oxidoreductase subunit; E=1e-28 COG: slr0844; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=3e-29 PAB1402; COG0651 Formate hydrogenlyase subunit 3; E=4e-17 sll1732; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=1e-16 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.41 PF00361; NADH-Ubiquinone/plastoquinone (; E=1.2e-36. (469 aa)    
Predicted Functional Partners:
nuoM
PMID: 7690854 best DB hits: BLAST: pir:H81796; NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M; E=1e-15 pir:E81220; NADH dehydrogenase I, M chain NMB0258 [imported] -; E=4e-15 swissprot:Q9ZCG0; NUOM_RICPR NADH DEHYDROGENASE I CHAIN M; E=3e-14 COG: NMB0258; COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); E=4e-16 PH1431; COG0651 Formate hydrogenlyase subunit 3; E=6e-13 HP1272; COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); E=3e-12 PFAM: PF00361; NADH-Ubiquinone/plastoquinone (co; E=2e-07.
 0.999
RB10314
Conserved hypothetical protein; PMID: 9537320 best DB hits: BLAST: pir:G70374; hypothetical protein aq_863 - Aquifex aeolicus -----; E=6e-49 pir:H82182; conserved hypothetical protein VC1582 [imported] - Vibrio; E=8e-46 pir:E69745; hypothetical protein ybcD - Bacillus subtilis -----; E=1e-39 COG: aq_863; COG3002 Uncharacterized BCR; E=6e-50 PFAM: PF02873; UDP-N-acetylenolpyruvoylglucosamine; E=0.038; Belongs to the UPF0753 family.
  
 0.956
RB1432
Conserved hypothetical protein-putative multisubunit Na+/H+ antiporter; PMID: 11016950 best DB hits: BLAST: gb:AAG19081.1; (AE005007) Vng0565c [Halobacterium sp. NRC-1]; E=5e-11 pir:H71683; hypothetical protein RP285 - Rickettsia prowazekii; E=9e-09 pir:E75113; long hypothetical protein PAB0488 - Pyrococcus abyssi; E=5e-07 COG: VNG0565C; COG1006 Multisubunit Na+/H+ antiporter; E=4e-12 PFAM: PF01898; Protein of unknown function DUF67; E=1.9e-11.
  
 
 0.947
ndhF-2
Best DB hits: BLAST: pir:G82182; probable NADH dehydrogenase VC1581 [imported] - Vibrio; E=2e-42 gb:AAF27211.1; AF111731_1 (AF111731) NADH dehydrogenase [Ceiba; E=2e-39 gb:AAF27226.1; AF111746_1 (AF111746) NADH dehydrogenase; E=3e-39 COG: VC1581; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=1e-43 BS_shaA_1; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain; E=1e-25 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.0058 PF00361; NADH-Ubiquinone/plastoquinone; E=5.6e-38.
  
  
 
0.929
RB1436
Conserved hypothetical protein; PMID: 9679194 PMID: 11016950 best DB hits: BLAST: swissprot:O58672; Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 -----; E=0.052 pir:C75465; conserved hypothetical protein - Deinococcus radiodurans; E=0.13 pir:F75101; hypothetical protein PAB0803 - Pyrococcus abyssi; E=0.67 COG: PH0944; COG1320 Multisubunit Na+/H+ antiporter; E=0.005.
 
 
 0.927
ndh
NADH dehydrogenase; PMID: 6265208 best DB hits: BLAST: pir:S74826; NADH dehydrogenase (EC 1.6.99.3) - Synechocystis sp; E=1e-110 embl:CAA71031.1; (Y09899) putative NADH dehydrogenase [Calothrix; E=1e-106 gb:AAC46302.1; (AF038423) NADH dehydrogenase [Mycobacterium; E=9e-91 COG: slr0851; COG1252 NADH dehydrogenase, FAD-containing subunit; E=1e-111 PFAM: PF01494; FAD binding domain; E=0.015 PF00732; GMC oxidoreductases; E=0.067 PF00070; Pyridine nucleotide-disulphide; E=7.9e-33.
   
 
 0.926
RB1442
Conserved hypothetical protein-putative Na+/H+ antiporter; PMID: 10360571 best DB hits: BLAST: pir:C72280; conserved hypothetical protein - Thermotoga maritima; E=8e-09 pir:A71726; hypothetical protein RP156 - Rickettsia prowazekii; E=3e-08 pir:A75113; hypothetical protein PAB0485 - Pyrococcus abyssi (strain; E=8e-08 COG: TM1205; COG1863 Multisubunit Na+/H+ antiporter; E=8e-10 PFAM: PF01899; Protein of unknown function DUF68; E=1.9e-09.
  
 
 0.917
RB1439
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:F82494; conserved hypothetical protein VCA0153 [imported] -; E=5e-05 gb:AAF21817.1; AF097740_6 (AF097740) multiple resistance and pH; E=7e-04 ddbj:BAB05033.1; (AP001511) Na+H+ antiporter [Bacillus; E=0.004 COG: VCA0153; COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit; E=4e-06.
  
 
 0.905
RB1433
Conserved hypothetical protein; PMID: 9823893 best DB hits: BLAST: pir:G71681; hypothetical protein RP267 - Rickettsia prowazekii; E=1e-19 gb:AAG19082.1; (AE005007) Vng0564h [Halobacterium sp. NRC-1]; E=3e-09 pir:S61393; hypothetical protein 2 - Bacillus sp. (strain C-125); E=1e-05 COG: RP267_2; COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit; E=6e-20.
  
 
 0.856
RB1434
Conserved hypothetical protein; PMID: 9823893 best DB hits: BLAST: pir:G71681; hypothetical protein RP267 - Rickettsia prowazekii; E=2e-22 gb:AAG19083.1; (AE005007) Vng0566c [Halobacterium sp. NRC-1]; E=6e-15 pir:G72280; conserved hypothetical protein - Thermotoga maritima; E=0.001 COG: VNG0566C; COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit; E=6e-16 RP267_1; COG1563 Uncharacterized ACR; E=8e-04 PA1054_2; COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit; E=0.001.
  
 
 0.856
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.