Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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co-expression
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[Homology]
Score
RB10341Hypothetical protein. (61 aa)    
Predicted Functional Partners:
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.568
flbA
FlbA protein; PMID: 9748431 PMID: 1699845 best DB hits: BLAST: swissprot:P21296; FLBA_CAUCR FLBA PROTEIN ----- gb: AAC62523.1; E=2e-19 swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=5e-11 embl:CAA76834.1; (Y17720) SPINDLY protein [Petunia x hybrida]; E=8e-11 COG: aq_2197; COG0457 TPR-repeat-containing proteins; E=2e-09 PFAM: PF00515; TPR Domain; E=5.6e-07.
       0.568
rpdD
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.568
RB10333
Protein kinase homolog; Best DB hits: BLAST: pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=5e-18 pir:T42077; protein kinase homolog - Streptomyces coelicolor -----; E=1e-16 pir:T35491; probable serinethreonine-specific protein kinase pkaF -; E=1e-16 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-15 PFAM: PF00069; Protein kinase domain; E=3.2e-06.
       0.421
RB10328
Conserved hypothetical protein-putative SAM-dependent methyltransferase; PMID: 10567266 PMID: 10086841 best DB hits: BLAST: pir:H75538; conserved hypothetical protein - Deinococcus radiodurans; E=1e-17 ddbj:BAB05098.1; (AP001511) BH1379~unknown conserved protein; E=4e-13 swissprot:P54471; YQFN_BACSU HYPOTHETICAL 23.7 KD PROTEIN IN; E=3e-12 COG: DR0276; COG2384 Predicted SAM-dependent methyltransferase; E=1e-18.
       0.411
RB10329
Best DB hits: BLAST: pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=2e-32 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=4e-32 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=5e-31 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=4e-33 PA5360; COG0745 Response regulators consisting of a CheY-like; E=9e-17 VC0622_4; COG0784 CheY-like receiver domains; E=2e-16 PFAM: PF00072; Response regulator receiver doma; E=6e-29 PF00069; Protein kinase domain; E=6.7e-52.
       0.411
RB10330
Best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=3e-69 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=2e-56 pir:H83132; probable sensorresponse regulator hybrid PA4112; E=1e-52 COG: PA4982; COG0642 Sensory transduction histidine kinases; E=4e-49 PFAM: PF00512; His Kinase A (phosphoacceptor) d; E=1.3e-22 PF02518; Histidine kinase-, DNA gyrase B-; E=8e-46 PF00072; Response regulator receiver doma; E=6.2e-33.
       0.411
RB10332
Hypothetical protein-putative transmembrane protein.
       0.411
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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