Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10372Similar to integral membrane protein; PMID: 10688204 best DB hits: BLAST: pir:B81282; probable integral membrane protein Cj1373 [imported] -; E=5e-09 COG: Cj1373; COG1033 Membrane proteins related to SecD/SecF; E=5e-10. (775 aa)    
Predicted Functional Partners:
RB10370
Conserved hypothetical protein-putative phosphatase; PMID: 8969498 best DB hits: BLAST: swissprot:P54607; YHCW_BACSU HYPOTHETICAL 24.7 KD PROTEIN IN; E=6e-15 ref:XP_010289.2; DNA segment, numerous copies, expressed probes; E=9e-14 gb:AAA58622.1; (M86934) Gene from Xp22.3 which escapes; E=4e-13 COG: BS_yhcW; COG0637 Predicted phosphatase/phosphohexomutase; E=6e-16 gph; COG0546 Predicted phosphatases; E=6e-08 PA2067; COG0637 Predicted phosphatase/phosphohexomutase; E=8e-08 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=2.1e-26.
       0.773
lspA
Probable prolipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.773
tolQ
Probable TolQ; PMID: 8921895 best DB hits: BLAST: gb:AAK03054.1; (AE006136) TolQ [Pasteurella multocida]; E=3e-10 swissprot:P43768; TOLQ_HAEIN TOLQ PROTEIN ----- pir: I64064; E=7e-09 pir:PC4258; tolQ protein - Haemophilus influenzae (fragment) -----; E=2e-08 COG: HI0385; COG0811 Biopolymer transport proteins; E=7e-10 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=1.4e-18.
  
   
 0.749
tolQ-2
Probable tolQ protein; PMID: 8331075 PMID: 10348868 PMID: 8921895 best DB hits: BLAST: pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=7e-13 pir:H71686; tolQ protein (tolQ) RP309 - Rickettsia prowazekii; E=1e-10 pir:G82187; biopolymer transport protein ExbB-related protein VC1547; E=1e-10 COG: PA2983; COG0811 Biopolymer transport proteins; E=7e-14 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=4e-28.
  
   
 0.736
tolQ-3
PMID: 10984043 best DB hits: BLAST: pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=1e-15 pir:D82726; conserved hypothetical protein XF1079 [imported] -; E=4e-10 gb:AAC69453.1; (AF047974) TolR [Vibrio cholerae]; E=1e-09 COG: PA2983; COG0811 Biopolymer transport proteins; E=1e-16 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=1.9e-20.
  
   
 0.722
motB
Probable MotB homolog; PMID: 7934817 PMID: 9387221 PMID: 1447140 best DB hits: BLAST: swissprot:P39064; YTXE_BACSU HYPOTHETICAL 27.6 KD PROTEIN IN ACUC; E=2e-10 gb:AAB94398.1; (U91841) MotB homolog [Bacillus firmus]; E=3e-09 ddbj:BAB06958.1; (AP001518) BH3239~unknown conserved protein; E=2e-07 COG: BS_ytxE; COG1360 Flagellar motor protein; E=2e-11 PA0973; COG2885 Outer membrane protein and related; E=5e-05 PFAM: PF00691; OmpA family; E=1.4e-11.
  
   
 0.697
trkH
PMID: 7896723 best DB hits: BLAST: gb:AAB90400.1; (AE001046) TRK potassium uptake system protein; E=8e-61 pir:G82037; potassium uptake protein TrkH VC2756 [imported] - Vibrio; E=4e-49 swissprot:P44843; TRKH_HAEIN TRK SYSTEM POTASSIUM UPTAKE PROTEIN; E=1e-46 COG: AF0839; COG0168 Trk-type K+ transport systems, membrane components; E=8e-62 NMB0661_2; COG0168 Trk-type K+ transport systems, membrane; E=1e-36 PA3210; COG0168 Trk-type K+ transport systems, membrane components; E=1e-36 PFAM: PF02386; Sodium transport protein; E=1.1e-54.
     
 0.624
RB11559
Similar to squalene-hopene-cyclase; PMID: 8905231 best DB hits: BLAST: pir:S75116; squalene-hopene-cyclase - Synechocystis sp. (strain PCC; E=0.16.
      
 0.618
mgtE
Mg2+ transport protein; Acts as a magnesium transporter.
      
 0.618
kamA
L-lysine 2,3-aminomutase; Best DB hits: BLAST: pir:C82554; conserved hypothetical protein XF2474 [imported] -; E=7e-72 gb:AAG59345.1; AE005648_7 (AE005648) orf, hypothetical protein; E=4e-70 swissprot:P39280; YJEK_ECOLI HYPOTHETICAL 38.7 KD PROTEIN IN; E=1e-67 COG: XF2474; COG1509 Lysine 2,3-aminomutase; E=7e-73 PFAM: PF02587; Uncharacterized ACR, YjeK family COG; E=6e-109.
      
 0.618
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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