Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
RB10397Hypothetical protein. (314 aa)    
Predicted Functional Partners:
smuG1
Single-strand selective monofunctional uracil DNA glycosylase; PMID: 10074426 best DB hits: BLAST: ddbj:BAA91571.1; (AK001235) unnamed protein product [Homo; E=3e-51 gb:AAD17300.1; (AF125181) single-strand selective monofunctional; E=1e-50 gb:AAF55400.1; (AE003716) CG5285 gene product [Drosophila; E=5e-33.
       0.773
RB10396
Conserved hypothetical protein-putative membrane associated protein.
       0.773
ftsA
Best DB hits: BLAST: gb:AAB89578.1; (AE000988) coenzyme F390 synthetase (ftsA-2); E=6e-37 pir:A69082; coenzyme F390 synthetase III - Methanobacterium; E=2e-36 pir:B69115; coenzyme F390 synthetase II - Methanobacterium; E=7e-36 COG: AF1671; COG1541 Coenzyme F390 synthetase; E=6e-38.
       0.561
upK
Probable receptor protein kinase; Best DB hits: BLAST: embl:CAC20842.1; (AJ250467) receptor protein kinase [Pinus; E=6e-04 pir:T10659; probable serinethreonine-specific protein kinase (EC; E=0.019 embl:CAB95344.1; (AL359782) possible putative adenylate cyclase; E=0.081.
       0.482
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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