Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RB10399Hypothetical protein. (81 aa)    
Predicted Functional Partners:
RB10401
Similar to type 8 capsule gene Cap8B; PMID: 8606192 PMID: 9045821 best DB hits: BLAST: gb:AAB49431.1; (U73374) Cap8B [Staphylococcus aureus]; E=6e-19 gb:AAC46085.1; (U81973) Cap5B [Staphylococcus aureus]; E=1e-18 ddbj:BAB07387.1; (AP001519) capsular polysaccharide biosynthesis; E=2e-18 COG: BH3668; COG0489 ATPases involved in chromosome partitioning; E=2e-19 MJ0547; COG0455 ATPases involved in chromosome partitioning; E=1e-04 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.68.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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