STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1040Hypothetical protein. (103 aa)    
Predicted Functional Partners:
RB1043
Hypothetical protein.
       0.565
RB1044
Conserved hypothetical protein-putative metal-dependent hydrolases; Best DB hits: BLAST: pir:T36187; hypothetical protein SCE29.08c - Streptomyces coelicolor; E=6e-52 pir:T34934; hypothetical protein SC3F9.12 SC3F9.12 - Streptomyces; E=9e-47 swissprot:Q58778; YD83_METJA HYPOTHETICAL PROTEIN MJ1383 PRECURSOR; E=7e-19 COG: MJ1383; COG1099 Predicted metal-dependent hydrolases with the; E=6e-20.
       0.430
recG
ATP-dependent DNA helicase RecG; PMID: 7774596 PMID: 1938888 best DB hits: BLAST: pir:H75338; DNA helicase RecG - Deinococcus radiodurans (strain R1); E=1e-114 swissprot:Q55681; RECG_SYNY3 ATP-DEPENDENT DNA HELICASE RECG; E=1e-111 pir:G72405; ATP-dependent DNA helicase - Thermotoga maritima (strain; E=1e-109 COG: DR1916; COG1200 RecG-like helicases; E=1e-115 BS_mfd; COG1197 Transcription-repair coupling factor - superfamily; E=5e-56 sll0377; COG1197 Transcription-repair coupling factor - superfamily II; E=2e-54 PFAM: PF01336; OB-fold nucleic acid binding domai; E=0.13 PF00271; Helicase [...]
       0.430
RB1047
Hypothetical protein-transmembrane prediction.
       0.424
RB1048
Hypothetical protein-signal peptide prediction; Best DB hits: BLAST: pir:A69643; serine proteinase Do, heat-shock protein htrA - Bacillus; E=0.77 PFAM: PF00590; Tetrapyrrole (Corrin/Porphyri; E=0.39.
       0.424
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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