STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10430Hypothetical protein; PMID: 11481431. (330 aa)    
Predicted Functional Partners:
RB10431
Hypothetical protein.
       0.773
RB10433
Hypothetical protein-putative transmembrane protein.
       0.705
RB10434
Mannosyltransferase; Best DB hits: BLAST: pir:A75597; mannosyltransferase - Deinococcus radiodurans (strain; E=3e-34 pir:I76776; Mannosyltransferase (EC 5.-.-.-) B - Escherichia coli; E=1e-27 gb:AAF04384.1; AF189151_7 (AF189151) WbdB; mannosyl transferase B; E=1e-27 COG: DRA0039; COG0438 Predicted glycosyltransferases; E=3e-35 PFAM: PF00534; Glycosyl transferases group 1; E=3.4e-29.
       0.673
RB10436
Mannosyl transferase; PMID: 10978535 best DB hits: BLAST: pir:S22620; hypothetical protein 18.9 - Salmonella choleraesuis; E=7e-55 ddbj:BAB03210.1; (AB046360) putative glycosyltransferase; E=4e-53 ddbj:BAA94399.1; (AB041266) mannosyl transferase [Actinobacillus; E=2e-52 COG: DRA0040; COG0438 Predicted glycosyltransferases; E=1e-50 PFAM: PF00534; Glycosyl transferases group 1; E=2.4e-29.
       0.673
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
 
     0.632
RB10428
Probable polysaccharide biosynthesis related protein; Best DB hits: BLAST: gb:AAC44056.1; (U51197) unknown [Sphingomonas sp. S88]; E=1e-12 pir:H75097; polysaccharide biosynthesis related protein PAB0783 -; E=4e-05 COG: PAB0783; COG2244 Membrane protein involved in the export of; E=3e-06 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.02.
 
     0.620
RB6426
Hypothetical protein; PMID: 11259647.
  
     0.603
dksA-2
PMID: 2180916 best DB hits: BLAST: pir:D71366; probable dnaK suppressor - syphilis spirochete -----; E=1e-09 pir:T34677; hypothetical protein SC1A9.28c SC1A9.28c - Streptomyces; E=9e-07 pir:E81429; dksA-like protein Cj0125c [imported] - Campylobacter; E=5e-06 COG: TP0096; COG1734 DnaK suppressor protein; E=1e-10 PFAM: PF01258; Prokaryotic dksA/traR C4-type zi; E=5e-10.
  
     0.416
RB4732
Similar to shikimate kinase; PMID: 11466286 PMID: 95337427 PMID: 95218635 best DB hits: BLAST: pir:T36945; hypothetical protein SCJ1.12 - Streptomyces coelicolor; E=0.27 swissprot:P95014; AROK_MYCTU SHIKIMATE KINASE (SK) -----; E=0.40 PFAM: PF01202; Shikimate kinase; E=0.52.
  
     0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.